CellOrganizer for Docker
CellOrganizer for Docker contains binaries for the functions
- img2slml, the top-level function to train generative models of cell morphology, and
- slml2img, the top-level function to generate simulated instances from a trained generative model,
- slml2info, the top-level function to generate a report from information extracted from a single generative model.
- slml2report, the top-level function to generate a report from comparing generative models.
- slml2slml, the top-level function to combine models into a single model file.
Instructions on installing Docker and downloading the CellOrganizer for Docker image can be found below
|Release Version||Installation and Running||DockerHub||Source code|
|CellOrganizer for Docker v2.8.0 (Jupyter version)||Click Here||Click Here||Click Here|
|CellOrganizer for Docker v2.7.2||Click Here||Click Here||Click Here|
|CellOrganizer for Docker v2.7.1||Click Here||Click Here||Click Here|
The image contains the following libraries, models and images.
an open-source project that automates the deployment of software applications inside containers by providing an additional layer of abstraction and automation of OS-level virtualization on Linux.
What are containers?
The industry standard today is to use Virtual Machines (VMs) to run software applications. VMs run applications inside a guest Operating System, which runs on virtual hardware powered by the server’s host OS.
VMs are great at providing full process isolation for applications: there are very few ways a problem in the host operating system can affect the software running in the guest operating system, and vice-versa. But this isolation comes at great cost — the computational overhead spent virtualizing hardware for a guest OS to use is substantial.
Containers take a different approach: by leveraging the low-level mechanics of the host operating system, containers provide most of the isolation of virtual machines at a fraction of the computing power.
- Images – The blueprints of our application which form the basis of containers.
- Containers – Created from Docker images and run the actual application. A list of running containers can be seen using the docker ps command.
- Docker Daemon – The background service running on the host that manages building, running and distributing Docker containers. The daemon is the process that runs in the operating system which clients talk to.
- Docker Client – The command line tool that allows the user to interact with the daemon. More generally, there can be other forms of clients too – such as Kitematic which provide a GUI to the users.
- Docker Hub – A registry of Docker images. You can think of the registry as a directory of all available Docker images. If required, one can host their own Docker registries and can use them for pulling images.
[ taken from: https://docs.docker.com/get-started/overview/]
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- New Release! CellOrganizer v2.8.1 June 20, 2019
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- New Release! CellOrganizer v2.8.0 May 28, 2019
- New Release! CellOrganizer v2.7.2, CellOrganizer for Docker and CellOrganizer for Galaxy! August 13, 2018