This version of CellOrganizer can be used through a few simple Matlab
scripts or via a graphical user interface. CellOrganizer has been tested in Linux using Matlab 2011b/2012b and in MacOSX using 2012a.
- Version 1.9.1
- Updated template files.
- Updated methods so that if it fails to synthesize a framework on an iteration, it will report to the user and will try to synthesize more images without exiting CellOrganizer. This feature is useful for individuals running CellOrganizer in a cluster.
- Version 1.9
- Uses Bio-Formats to read images, thus supporting multiple image file formats.
- Supports use of wildcards when defining the path to image files.
- Better handling of edge cases, improved logging as well providing more feedback on training or synthesis failure.
- No longer supports 3D images as a list of single tiff files.
- Users can use the training flag when learning a 2D generative model, that is they can decide whether they want to train a nuclear shape model, a framework model or framework model with a protein pattern model.
|Source Code||README||RELEASE NOTES||CellOrganizer v1.9.1||Text Document||PDF Document||CellOrganizer v1.9.0||Text Document||PDF Document|
Coming soon! Compiled versions for Linux and Mac OS X. These versions do not require a Matlab installation or license.
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- New Release! CellOrganizer v2.7.2, CellOrganizer for Docker and CellOrganizer for Galaxy! August 13, 2018
- New Release! CellOrganizer v2.7.1 and CellOrganizer for Docker April 13, 2018
- New Release! Version 2.7.0 March 7, 2018
- New Release! Version 2.6.0 June 26, 2017
- New Release! Version 2.5.2 September 12, 2016