This version of CellOrganizer can be used through a few simple Matlab
scripts or via a graphical user interface. CellOrganizer has been tested in Linux using Matlab 2011b/2012b and in MacOSX using 2012a.
- Version 1.9.1
- Updated template files.
- Updated methods so that if it fails to synthesize a framework on an iteration, it will report to the user and will try to synthesize more images without exiting CellOrganizer. This feature is useful for individuals running CellOrganizer in a cluster.
- Version 1.9
- Uses Bio-Formats to read images, thus supporting multiple image file formats.
- Supports use of wildcards when defining the path to image files.
- Better handling of edge cases, improved logging as well providing more feedback on training or synthesis failure.
- No longer supports 3D images as a list of single tiff files.
- Users can use the training flag when learning a 2D generative model, that is they can decide whether they want to train a nuclear shape model, a framework model or framework model with a protein pattern model.
|Source Code||README||RELEASE NOTES||CellOrganizer v1.9.1||Text Document||PDF Document||CellOrganizer v1.9.0||Text Document||PDF Document|
Coming soon! Compiled versions for Linux and Mac OS X. These versions do not require a Matlab installation or license.
- New Release! CellOrganizer v2.9.3 November 17, 2021
- MMBioS 2021 Workshop July 29, 2021
- New Release! CellOrganizer v2.9.2 July 13, 2021
- New Release! CellOrganizer v2.9.1 July 12, 2021
- New Release! CellOrganizer v2.8.1 June 20, 2019