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CellOrganizer
  • Home
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    • Helper Utilities
    • CellOrganizer for Matlab
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CellOrganizer v2.7.0

Release Highlights

Features
  • Included new model class/type constructive_geometry/half-ellipsoid
  • Included new model class/type:framework/pca
  • Included support for constructing models with OME.TIFF containing regions of interest

 

Enhancements
  • img2slml now checks the combination of model class and type for every submodel before attempting to extract parameters from images
  • Added demo3D44 to show how to synthesize from a model class/type constructive_geometry/half-ellipsoid
  • Added a battery of unit test for demos using Matlab testing framework
  • Added demo3D45 to show how to use OME.TIFF files with ROIs
  • Added demo2D05, demo2D06, demo2D07 to show how to train and synthesize from a classtype framework/pca model

 

Downloads

  • CellOrganizer v2.7 Compressed Source Code [484 MB]
  • CellOrganizer v2.7 Compressed Source Code + Image Collection [9.2 GB]

 

Documentation

  • To read the documentation online, click here.

 

Requirements

  • Matlab 2016b or newer
  • Bioinformatics Toolbox
  • Computer Vision System Toolbox
  • Control System Toolbox
  • Curve Fitting Toolbox
  • Image Processing Toolbox
  • Mapping Toolbox
  • Optimization Toolbox
  • Robust Control Toolbox
  • Signal Processing Toolbox
  • Simulink
  • Simulink Design Optimization
  • Statistics and Machine Learning Toolbox
  • System Identification Toolbox
  • Wavelet Toolbox

 

Validating Suite

CellOrganizer releases for the 2.0 family are continuously tested using a set of

  • public tests using the Matlab Unit Testing Framework
  • private tests for compatibility with old releases of Matlab

 

Compatibility

CellOrganizer releases for the 2.0 family have been tested on

  • Matlab 2016b/Ubuntu 12.04
  • Matlab 2016b/MacOSX El Capitan

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Recent Posts

  • New Release! CellOrganizer v2.9.3 November 17, 2021
  • MMBioS 2021 Workshop July 29, 2021
  • New Release! CellOrganizer v2.9.2 July 13, 2021
  • New Release! CellOrganizer v2.9.1 July 12, 2021
  • New Release! CellOrganizer v2.8.1 June 20, 2019

Contact Us

If you have a question regarding any of the CellOrganizer products, then feel free to send us a message.

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Support for CellOrganizer has been provided by grants GM075205, GM090033 and GM103712 from the National Institute of General Medical Sciences, grants MCB1121919 and MCB1121793 from the U.S. National Science Foundation, by a Forschungspreis from the Alexander von Humboldt Foundation, and by the Freiburg Institute for Advanced Studies.

Copyright © 2007-2020 by the Murphy Lab, Carnegie Mellon University