- Refactored the process by which images are converted to parameterizations to improve performance and
adding new models.
- Refactored and simplified demos to make it easier to use as templates for user scripts.
- Included methods to download Murphy Lab 2D/3D HeLa and 3D 3T3 image collections rather than downloading them
time demos run.
- Faster training and synthesis for 3D diffeomorphic models.
- Miscellaneous bug fixes and performance improvements.
- CellOrganizer v2.5 Compressed Source Code [92 MB]
- CellOrganizer v2.5 Compressed Source Code + Image Collection [2.8 GB]
- To read the documentation online, click here.
- Matlab 2014b or newer
- Image Processing Toolbox for Matlab
- Statistics and Machine Learning Toolbox/Statistics Toolbox
- SymBiology Toolbox
- Curve Fitting Toolbox
CellOrganizer releases for the 2.0 family are continuously tested using a set of
- public tests using the Matlab Unit Testing Framework
- private tests for compatibility with old releases of Matlab
CellOrganizer releases for the 2.0 family have been tested on
- Matlab 2015a/Ubuntu 12.04
- Matlab 2014a/Ubuntu 12.04
- Matlab 2016a/MacOSX El Capitan
- New Release! CellOrganizer v2.9.3 November 17, 2021
- MMBioS 2021 Workshop July 29, 2021
- New Release! CellOrganizer v2.9.2 July 13, 2021
- New Release! CellOrganizer v2.9.1 July 12, 2021
- New Release! CellOrganizer v2.8.1 June 20, 2019