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CellOrganizer
  • Home
  • News
  • People
  • Publications
  • Downloads
    • Helper Utilities
    • CellOrganizer for Matlab
      • Version 2.10
      • Version 2.9.3
      • Version 2.9.2
      • Version 2.9.1
      • Version 2.8.1
      • Version 2.8.0
      • Version 2.7.2
      • Version 2.7.1
      • Version 2.7.0
      • Version 2.6.0
      • Version 2.5.2
      • Version 2.5.1
      • Version 2.5.0
      • Versions 2.0-2.4
      • Version 1.9
      • Version 1.8
      • Version 1.7
      • Version 1.6
    • CellOrganizer for Docker
    • CellOrganizer for Galaxy
    • CellOrganizer for Singularity
    • Trained Models Repository
  • Documentation
    • What can I do with CellOrganizer?
    • CellOrganizer for Matlab
    • CellOrganizer for Docker
    • CellOrganizer for Galaxy
  • CellOrganizer for Galaxy
  • Contact Us

CellOrganizer v2.10

 

Release Highlights

  • New features include
    • functions for directly constructing SPHARM-RPDM representations from individual 3D objects,
    • calculation of Jaccard index (in additional to Hausdorff distance) to measure the quality of a given shape representation, and
    • ability to generate and customize movies illustrating temporal evolution of shape and organization.

Github Repository

      • Github

Documentation

      • To read the documentation online, click here.

Matlab Requirements

      • Matlab 2019b or newer
      • Bioinformatics Toolbox
      • Computer Vision System Toolbox
      • Control System Toolbox
      • Curve Fitting Toolbox
      • Image Processing Toolbox
      • Mapping Toolbox
      • Optimization Toolbox
      • Robust Control Toolbox
      • Signal Processing Toolbox
      • Simulink
      • Simulink Design Optimization
      • Statistics and Machine Learning Toolbox
      • System Identification Toolbox
      • Wavelet Toolbox

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Recent Posts

  • CellOrganizer v2.10 Released June 22, 2023
  • New Release! CellOrganizer v2.9.3 November 17, 2021
  • MMBioS 2021 Workshop July 29, 2021
  • New Release! CellOrganizer v2.9.2 July 13, 2021
  • New Release! CellOrganizer v2.9.1 July 12, 2021

Contact Us

If you have a question regarding any of the CellOrganizer products, then feel free to send us a message.

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Support for CellOrganizer has been provided by grants GM075205, GM090033 and GM103712 from the National Institute of General Medical Sciences, grants MCB1121919 and MCB1121793 from the U.S. National Science Foundation, by a Forschungspreis from the Alexander von Humboldt Foundation, and by the Freiburg Institute for Advanced Studies.

Copyright © 2007-2020 by the Murphy Lab, Carnegie Mellon University