CellOrganizer v2.7.0

Release Highlights

Features

• Included new model class/type constructive_geometry/half-ellipsoid
• Included new model class/type:framework/pca
• Included support for constructing models with OME.TIFF containing regions of interest

Enhancements

• img2slml now checks the combination of model class and type for every submodel before attempting to extract parameters from images
• Added demo3D44 to show how to synthesize from a model class/type constructive_geometry/half-ellipsoid
• Added a battery of unit test for demos using Matlab testing framework
• Added demo3D45 to show how to use OME.TIFF files with ROIs
• Added demo2D05, demo2D06, demo2D07 to show how to train and synthesize from a classtype framework/pca model

Downloads

• CellOrganizer v2.7 Compressed Source Code [484 MB]
• CellOrganizer v2.7 Compressed Source Code + Image Collection [9.2 GB]

Documentation

• To read the documentation online, click here.

Requirements

• Matlab 2016b or newer
• Bioinformatics Toolbox
• Computer Vision System Toolbox
• Control System Toolbox
• Curve Fitting Toolbox
• Image Processing Toolbox
• Mapping Toolbox
• Optimization Toolbox
• Robust Control Toolbox
• Signal Processing Toolbox
• Simulink
• Simulink Design Optimization
• Statistics and Machine Learning Toolbox
• System Identification Toolbox
• Wavelet Toolbox

Validating Suite

CellOrganizer releases for the 2.0 family are continuously tested using a set of

• public tests using the Matlab Unit Testing Framework
• private tests for compatibility with old releases of Matlab

Compatibility

CellOrganizer releases for the 2.0 family have been tested on

• Matlab 2016b/Ubuntu 12.04
• Matlab 2016b/MacOSX El Capitan