README
------
CellOrganizer v1.6
For generating 3D images, using a computer with at least 2 GB of memory is recommended.
I. Installation
---------------
To install CellOrganizer
(1) Download the latest distribution from
http://CellOrganizer.org/Downloads
or
http://murphylab.web.cmu.edu/software/CellOrganizer
(2) Unzip the distribution into a folder of your choice
(3) Start Matlab and change the default directory to the folder chosen above
II. Using CellOrganizer via the Graphical User Interface
Enter "startup" at the Matlab command prompt
III. Using CellOrganizer from the Matlab command line
Enter "startup" at the Matlab command prompt to add the relevant paths. The main CellOrganizer commands are
> img2slml
which trains a model from a set of images
and
> slml2img
which synthesizes one or more image(s) from a trained model.
IV. Examples using the Matlab command line
There are a numbers of demo files that illustrate how to use CellOrganizer from the command line. Type
> demo info
to get a listing of available demos.