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version 2.7.0
Release Notes
Features
- Included new model class/type: constructive_geomertry/half-ellipsoid.
- Included support for OME.TIFF with regions of interest.
Enhancements
- img2slml now checks the combination of model class and type for every submodel before attempting to extract parameters from image
- Improved pipeline so that CellOrganizer will stop computation and report to user if no images are found in the path or if software fails to extract parameters.
- Added demo3D44 to show how to synthesize from a model class/type constructive_geomertry/half-ellipsoid
- Added a battery of unit test for demos using Matlab testing framework
- Added demo3D45 to show how to use OME.TIFF files with ROIs.
Downloads
Documentation
- To read the documentation online, click here.
Requirements
- Matlab 2016b or newer
- Bioinformatics Toolbox
- Computer Vision System Toolbox
- Control System Toolbox
- Curve Fitting Toolbox
- Image Processing Toolbox
- Mapping Toolbox
- Optimization Toolbox
- Robust Control Toolbox
- Signal Processing Toolbox
- Simulink
- Simulink Design Optimization
- Statistics and Machine Learning Toolbox
- System Identification Toolbox
- Wavelet Toolbox
Validating Suite
CellOrganizer releases for the 2.0 family are continuously tested using a set of
- public tests using the Matlab Unit Testing Framework
- private tests for compatibility with old releases of Matlab
Compatibility
CellOrganizer releases for the 2.0 family have been tested on
- Matlab 2016b/Ubuntu 12.04
- Matlab 2016b/MacOSX El Capitan
Support for CellOrganizer has been provided by grants GM075205 and GM090033 from the
National Institute of General Medical Sciences,
by a Forschungspreis from the Alexander von Humboldt Foundation,
and by the School of Life Sciences of the Freiburg Institute for Advanced Studies.
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