function model = getNuclearShapeModel( data )
%GETNUCLEARSHAPEMODEL Helper function that returns the nuclear shape model
%of a generative model of protein subcellular location from a cell array
%containing the SLML instance.

% Author: Ivan E. Cao-Berg (icaoberg@cmu.edu)
% Created: May 29, 2007
% Last Update: March 8, 2008
%
% Copyright (C) 2008 Center for Bioimage Informatics/Murphy Lab
% Carnegie Mellon University
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published
% by the Free Software Foundation; either version 2 of the License,
% or (at your option) any later version.
%
% This program is distributed in the hope that it will be useful, but
% WITHOUT ANY WARRANTY; without even the implied warranty of
% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
% General Public License for more details.
%
% You should have received a copy of the GNU General Public License
% along with this program; if not, write to the Free Software
% Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA
% 02110-1301, USA.
%
% For additional information visit http://murphylab.web.cmu.edu or
% send email to murphy@cmu.edu

model = struct([]);

%get the nuclear model section delimiters
delimiters = getNuclearModelDelimiters( data );

if isempty(delimiters)
    error( 'CellOrganizer: A nuclear model was not found in the current file.' );
else
    %simplify data
    data = data(delimiters(1):delimiters(2));
    
    model.name = 'mxp';
    
    model.medaxis = struct([]);
    model.width = struct([]);
end

end%getNuclearShapeModel

%--------------------------------------------------------------------------
